File locations

Path	Contents
~/.config/bookmark-context/token	API token, mode 0600
~/.config/bookmark-context/config.toml	Config, if you created it
~/.local/share/bookmark-context/bookmarks.db	SQLite: collections, bookmarks, chunk text, saved page HTML
~/.local/share/bookmark-context/chroma/	Chroma vector store — one Chroma collection per bookmark collection, named col_<id>
~/.local/share/bookmark-context/trace/processes.jsonl	Opt-in process spawn/exit log. Rotates at 1 MB, keeps one .jsonl.1.
~/.local/share/bookmark-context/trace/mcp-tools.jsonl	Opt-in tool-call log (name, duration, outcome). Same rotation.
/tmp/mcp_raw.log	Raw JSON-RPC, written only while mcp_debug.py runs as a stdio proxy

To reset everything, stop the daemon and delete ~/.local/share/bookmark-context/. The token in ~/.config can stay.